| A Mixtape for Stom (2025) |
| Nam June Paik: Moon Is the Oldest TV (2023) as Self (archive footage) |
| Please Leave a Message: Anthology Film Archives Voicemails Through the Ages (2022) |
| Jono Meko antologija (2022) as Jonas Mekas |
| Fragments of Paradise (2022) as Self (archive footage) |
| Film: The Living Record of Our Memory (2022) as Self |
| 眩暈 Vertigo (2022) |
| Notes for a Déjà vu (2022) |
| Sugrįžę iš Niujorko (2021) as Himself |
| The Velvet Underground (2021) as Self |
| 9/11: Life Under Attack (2021) as Self |
| The Invisible Father (2021) as Self (archive footage) |
| Tapes (2020) |
| Tiny Tim: King for a Day (2020) as Himself |
| Elegy for J.M. (2019) |
| Sebastian and Jonas Leaving the Party (2019) |
| Cinema and Sanctuary (2019) as Self |
| Self Discovery for Social Survival (2019) as Narrator (voice) |
| Gena Rowlands — Unabhängig im Kino und im Leben (2019) as Self |
| Makeshift (for Mekas) (2019) |
| Last Interview Film of Jonas Mekas/version 1 (2019) as Self |
| Keep singing: a tribute to Jonas Mekas (2019) |
| Jonas Towards Broadway (2019) |
| 3 Friends Singing (...in the Desert) (2019) |
| Beyond the Bolex (2018) as Self |
| Barbara Rubin and the Exploding NY Underground (2018) |
| George (2018) as Self |
| Nitsch (2018) |
| I Don't Know Which Tree It Comes From that Fragrance (2017) as Self |
| On the Holy Spirit (2016) |
| EXPRMNTL (2016) as himself |
| I Had Nowhere to Go (2016) as Himself |
| Reminiscences of Jonas Mekas (2016) as Self |
| Últimas correspondencias (2016) as Self |
| Filmstudio, mon amour (2015) as Sé stesso |
| A Day in the Life of Andy Warhol (2015) as Self |
| Behind the Artist: Andy Warhol, an American Prophet (2015) |
| A Report from Venice (2015) |
| All About Bolex (2015) |
| My Birthday (2014) |
| River of Fundament (2014) as Wake Guest |
| Mes entretiens filmés (2013) as Himself |
| Jonas in the Jungle (2013) as Self |
| What Is Cinema? (2013) as Self |
| Out-Takes from the Life of a Happy Man (2012) as Jonas Mekas |
| Maya Deren, Take Zero (2012) as Himself |
| Reminiszenzen aus Deutschland (2012) as Self |
| My Mars Bar Movie (2011) as himself |
| 3.11 A Sense of Home Films (2011) as Himself (voice) (segment "Mt. Ventoux") |
| Free Radicals: A History of Experimental Film (2011) as Himself |
| Correspondencia Jonas Mekas - J.L. Guerin (2011) as Himself |
| Guest (2011) as Self |
| Cyclopean 3D: Life with a Beautiful Woman (2011) |
| Re: Maciunas and Fluxus (2011) |
| Portrait Serie - Jonas Mekas (2010) as himself |
| New York Conversations (2010) |
| Lavender (2010) as Self |
| Visionaries (2010) as Himself |
| Jonas Mekas in Kodachrome Days (2009) as Himself |
| It Came from Kuchar (2009) as Self (archive footage) |
| The Signing (2009) |
| The Perfect Team: The Making of 'On the Bowery' (2009) as Self |
| Doc (2008) as Himself |
| Question a Day (2008) |
| Andy Warhol's Factory People... Inside the Sixties Silver Factory (2008) |
| Notes on an American Film Director at Work (2008) as Self |
| 365 Day Project (2007) as Self |
| Sunday December 30, 2007 (2007) as Self |
| Jack Smith and the Destruction of Atlantis (2007) as Self |
| Tuesday Jan. 9, 2007 (2007) as Self |
| The Song of Central Park (2006) as Himself (voice) |
| Jonas' Independence Speech at the Anniversary of the Filmmaker's Cooperative (2006) |
| Graffiti Museum Bronx, NYC (2006) |
| End of the Millennium Espresso (2006) |
| Imperfect Film (2006) |
| Taping for As I was Moving Ahead… (2006) |
| Kreutzer Sonata (2006) |
| Anger Me (2006) as Himself |
| Notes on Marie Menken (2006) as Self |
| Who Gets to Call It Art? (2006) as Self |
| Nam June Paik: Lessons from the Video Master (2006) as Self |
| Meet The Kuchar Brothers (2006) |
| The Definition of Insanity (2005) |
| Vies et morts d'Andy Warhol (2005) |
| Excavating Taylor Mead (2005) as Self |
| A Letter from Greenpoint (2004) as Mekas |
| Not in Our Name (2003) as himself |
| Axiom of Choice (2003) as Self |
| Jonas tourne toujours (2002) as Himself |
| Im Spiegel der Maya Deren (2002) as Himself |
| Pastabos gyvenimo būdo paraštėse (2002) |
| A Letter to Penny Arcade (2001) |
| As I Was Moving Ahead Occasionally I Saw Brief Glimpses of Beauty (2000) as Narrator (voice) |
| Requiem for a Manual Typewriter (2000) as Himself |
| Letter to John from Jonas (1999) |
| Laboratorium Anthology (1999) as Himself |
| Jonas Mekas in Paris 10/97 (1998) |
| Song of Avignon (1998) as Self |
| My Country is Cinema (1998) as Self |
| Scenes from Allen's Last Three Days on Earth as a Spirit (1997) as Self |
| Ginsberg - egy költö a Lower East Side-ról (1997) as Self |
| Friday The 13 Okt, Jonas Mekas (1996) as Himself |
| Michael Snow Up Close (1996) as Himself |
| Cinema Is Not 100 Years Old (1996) as Himself |
| Nico Icon (1995) as Self |
| Jonas in the Desert (1994) as Self |
| Jonas Mekas in Budapest (1993) as Himself |
| The Misfits - 30 Years of Fluxus (1993) as Self |
| Zefiro Torna or Scenes from the Life of George Maciunas (Fluxus) (1992) |
| Award (1992) as Himself |
| Just Visiting This Planet (1991) |
| Quartet Number One (1991) |
| Interview and Reading: Jonas Mekas (1991) as Himself |
| Superstar: The Life and Times of Andy Warhol (1990) as Self |
| Step Across the Border (1990) as Butterfly Wing |
| Belladonna (1989) |
| Warhol's Cinema 1963-1968: Mirror for the Sixties (1989) as Self |
| Invocation: Maya Deren (1986) as Himself |
| He Stands in a Desert Counting the Seconds of His Life (1986) as Self (archive footage) |
| Fire in the East: A Portrait of Robert Frank (1986) as Self |
| Home Movies 1971-81 (1985) |
| Persistence of Vision (1984) as Self |
| Strong Medicine (1981) |
| The Queen of Sheba Meets the Atom Man (1981) |
| No. 18: Mahagonny (1980) as Self |
| Self-Portrait (1980) as Himself |
| J. Mekas (1980) as Self |
| ORG (1979) as Self (archive footage) |
| Paradise Not Yet Lost (1979) as Himself |
| Cinématon (1978) as N°1590 |
| Four Shadows (1978) |
| Notes for Jerome (1978) as Self |
| Lost, Lost, Lost (1976) as Self |
| Cartoline dall'America (1975) |
| ‘Rameau’s Nephew’ by Diderot (Thanx to Dennis Young) by Wilma Schoen (1974) |
| Notes on the Buffalo Conference: “Autobiography in American Independent Cinema” (1973) |
| Imagine (1972) as Self |
| Going Home (1972) as Himself |
| Reminiscences of a Journey to Lithuania (1972) as Self |
| Up Your Legs Forever (1971) as Self - Legs |
| Ricky Leacock Visit, April 15, 1971 (1971) as Self |
| Journey to Lithuania (1971) as Himself |
| Occhio privato sul nuovo mondo (1970) |
| Filmmakers (1969) as Himself |
| Diaries, Notes, and Sketches (1968) as Self |
| Diaries, Notes, and Sketches (1968) as self |
| A Matter of Baobab (1968) |
| Jonas (1968) as Himself |
| Underground New York (1968) as Self |
| The Song of Avila (1967) as Narrator |
| Poem Posters (1967) as Self |
| Screen Test [ST211]: Jonas Mekas (1966) as himself |
| Galaxie (1966) as Self |
| The Love Merchant (1966) as Lounge Patron |
| Shooting Guns (1966) |
| Andy Warhol Screen Tests (1965) as Self |
| Dirt (1965) |
| Jonas in the Brig (1965) as Himself |
| Empire (1965) as Self (uncredited) |
| Award Presentation to Andy Warhol (1964) as Self |
| Salvador Dalí at Work (1964) as Self |
| Diane the Zebra Woman (1962) |
| The Sin of Jesus (1961) |
| Cinématon n°1590 : Jonas Mekas |
| The Lamb as Self |
| Viva Jonas! as Himself |